There is no theme option to position the search box elsewhere, nor to add a phone number to the navigation bar. The only way to do that would be to customise the ‘header.php’ file and the theme’s stylesheet.
With regard to the page icons, when you create or edit an article there is an option in the Traject General Content Options metabox that enables you to set the icon for the article, or you can select the “NO IMAGE” option. There isn’t any theme option to replace the page icon with different content, to do that you would need to customise the page and post templates.
If there is anything else about the Traject theme you need help with, please just let us know. If you can’t find answers to your questions by searching this forum, please just create a new topic for each separate issue that you have and we’ll do our best to point you in the right direction.
Please try to remember to start a new topic for each separate issue that you have. We like to keep each topic in the Help Center focused on a single subject. We find that separating each question into a separate topic keeps the information much clearer and easier to follow. Also, it really helps other users to find information and it prevents threads from wandering down Tangent Lane. If you can’t find answers to your questions by searching this forum, please always create a new topic for each separate issue that you have. Thanks.